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Pull requests: nf-core/modules

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Pull requests list

Update to topics learnmsa/align
#11928 opened Jun 8, 2026 by LouisLeNezet Contributor Loading…
17 tasks
1
@LouisLeNezet
11924 xml output for gapseq module size/l
#11927 opened Jun 8, 2026 by brovolia Contributor Loading…
1
New module savana/cna Ready for Review
#11926 opened Jun 8, 2026 by manascripts Member Loading…
11 of 17 tasks
Busco busco update Ready for Review size/m update module
#11922 opened Jun 8, 2026 by DLBPointon Contributor Loading…
@DLBPointon
5
feat: chelae/trim
#11896 opened Jun 5, 2026 by emmcauley Contributor Loading…
8 of 17 tasks
1
Add new nf-core memote module with snapshot report output and nf-test coverage size/m
#11893 opened Jun 5, 2026 by Copilot AI • Draft
1
@brovolia
7
drop ext.when from modules size/xl
#11880 opened Jun 4, 2026 by matthdsm Contributor Loading…
17 tasks
Add snpclustering subworkflow
#11879 opened Jun 4, 2026 by dbaku42 Contributor Loading…
Update DEEPVARIANT/* modules to support phasing.
#11859 opened Jun 4, 2026 by awgymer Contributor Loading…
17 tasks
2
New module savana/to Ready for Review
#11849 opened Jun 3, 2026 by manascripts Member Loading…
11 of 14 tasks
9
Add new component: trtools_dumpstr Ready for Review
#11848 opened Jun 3, 2026 by KondratievaOlesya Loading…
13 tasks done
1
13
Update to topic isoseq3/tag
#11844 opened Jun 3, 2026 by bhargava-morampalli Contributor Loading…
17 tasks
1
@bhargava-morampalli
3
New module bwafastalign-mem size/m
#11840 opened Jun 3, 2026 by peterpru Member Loading…
17 tasks
@peterpru
1
updated stringtie Ready for Review size/xl
#11832 opened Jun 2, 2026 by khersameesh24 Contributor Loading…
3 tasks
1
2
New module baysor Ready for Review size/l
#11790 opened May 29, 2026 by khersameesh24 Contributor Loading…
4 tasks
1
12
Add new module: nanomonsv/get Ready for Review
#11788 opened May 29, 2026 by manascripts Member Loading…
10 of 17 tasks
1
Add varnet (https://github.com/skandlab/VarNet)
#11787 opened May 29, 2026 by kiranchari Loading…
1 task
22
Add regenie/runl1 module Ready for Review
#11768 opened May 26, 2026 by lyh970817 Contributor Loading…
14 tasks done
1
feat: support task.ext.args in sentieon/gvcftyper size/xs
#11763 opened May 26, 2026 by nicorap Contributor Loading…
11 of 14 tasks
2
Upgrade environment schema to support additional scenarios
#11758 opened May 25, 2026 by toniher Member Loading…
5
Add dotseq/dotseq
#11742 opened May 21, 2026 by pinin4fjords Member Loading…
7 tasks done
2
feat(custom): orfnormalise + orfmerge modules + orftable_fasta_gtf_buildorfcatalogue subworkflow
#11740 opened May 21, 2026 by pinin4fjords Member Loading…
5 tasks done
1
feat(vcontact3): add vcontact3/prepareddatabases module
#11738 opened May 21, 2026 by olawal1001 • Draft
17 tasks
23
new module: custom/bed12codonpositions Ready for Review
#11733 opened May 21, 2026 by pinin4fjords Member Loading…
4 tasks done
1
feat(simpleaf): add simpleaf/multiplexquant module
#11724 opened May 20, 2026 by an-altosian Contributor Loading…
3 tasks
5
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