Deprecate quartonotebook module in favour of quarto/notebook - #12659
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fasterius wants to merge 2 commits into
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Deprecate quartonotebook module in favour of quarto/notebook#12659fasterius wants to merge 2 commits into
quartonotebook module in favour of quarto/notebook#12659fasterius wants to merge 2 commits into
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| tuple val(meta), path(notebook) , emit: notebook | ||
| tuple val(meta), path("params.yml") , emit: params_yaml | ||
| tuple val(meta), path("${notebook_parameters.artifact_dir}/*") , emit: artifacts , optional: true | ||
| tuple val(meta), path("_extensions") , emit: extensions , optional: true |
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I think adding the versions.yml here too, and having the qmd write it would be useful here too. It adds a useful failure mode that ensures the report writes out versions.
| task.ext.when == null || task.ext.when | ||
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| script: | ||
| def deprecation_message = """ |
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Please include this in the stub too.
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This PR deprecates the
quartonotebookmodule in favour ofquarto/notebook, since another Quarto-related module has been added (quarto/prerender: #12187).PR checklist
nf-core modules test <MODULE> --profile dockernf-core modules test <MODULE> --profile singularitynf-core modules test <MODULE> --profile conda