Skip to content
Navigation Menu
Sign in
Appearance settings
Platform
AI CODE CREATION
GitHub Copilot
Write better code with AI
GitHub Copilot app
Direct agents from issue to merge
MCP Registry
Integrate external tools
DEVELOPER WORKFLOWS
Actions
Automate any workflow
Codespaces
Instant dev environments
Issues
Plan and track work
Code Review
Manage code changes
Code Quality
Enforce quality at merge
APPLICATION SECURITY
GitHub Advanced Security
Find and fix vulnerabilities
Code security
Secure your code as you build
Secret protection
Stop leaks before they start
EXPLORE
Why GitHub
Documentation
Blog
Changelog
Marketplace
View all features
Solutions
BY COMPANY SIZE
Enterprises
Small and medium teams
Startups
Nonprofits
BY USE CASE
App Modernization
DevSecOps
DevOps
CI/CD
View all use cases
BY INDUSTRY
Healthcare
Financial services
Manufacturing
Government
View all industries
View all solutions
Resources
EXPLORE BY TOPIC
AI
Software Development
DevOps
Security
View all topics
EXPLORE BY TYPE
Customer stories
Events & webinars
Ebooks & reports
Business insights
GitHub Skills
SUPPORT & SERVICES
Documentation
Customer support
Community forum
Trust center
Partners
View all resources
Open Source
COMMUNITY
GitHub Sponsors
Fund open source developers
PROGRAMS
Security Lab
Maintainer Community
GitHub Stars
Archive Program
REPOSITORIES
Topics
Trending
Collections
Enterprise
ENTERPRISE SOLUTIONS
Enterprise platform
AI-powered developer platform
AVAILABLE ADD-ONS
GitHub Advanced Security
Enterprise-grade security features
Copilot for Business
Enterprise-grade AI features
Premium Support
Enterprise-grade 24/7 support
Pricing
Search
/
Sign in
Sign up
Appearance settings
You signed in with another tab or window.
Reload
to refresh your session.
You signed out in another tab or window.
Reload
to refresh your session.
You switched accounts on another tab or window.
Reload
to refresh your session.
Dismiss alert
{{ message }}
Uh oh!
There was an error while loading.
Please reload this page
.
samtools
/
htslib
Public
Notifications
You must be signed in to change notification settings
Fork
474
Star
946
Code
Issues
137
Pull requests
32
Actions
Projects
Wiki
Security and quality
17
Insights
Additional navigation options
Code
Issues
Pull requests
Actions
Projects
Wiki
Security and quality
Insights
Actions: samtools/htslib
Actions
All workflows
Workflows
Containers
Containers
linux CI
linux CI
Mac CI
Mac CI
S3 integration (MinIO)
S3 integration (MinIO)
VMs
VMs
Windows/MinGW-W64 CI
Windows/MinGW-W64 CI
Show more workflows...
Management
Caches
All workflows
All workflows
Actions
Loading...
Loading
Sorry, something went wrong.
Uh oh!
There was an error while loading.
Please reload this page
.
will be ignored since log searching is not yet available
Showing runs from all workflows
will be ignored since log searching is not yet available
1,005 workflow runs
1,005 workflow runs
Workflow
Filter by Workflow
Sorry, something went wrong.
Filter
Loading
Sorry, something went wrong.
No matching workflows.
Event
Filter by Event
Sorry, something went wrong.
Filter
Loading
Sorry, something went wrong.
No matching events.
Status
Filter by Status
Sorry, something went wrong.
Filter
Loading
Sorry, something went wrong.
No matching statuses.
Branch
Filter by Branch
Sorry, something went wrong.
Filter
Loading
Sorry, something went wrong.
No matching branches.
Actor
Filter by Actor
Sorry, something went wrong.
Filter
Loading
Sorry, something went wrong.
No matching users.
Prevent excessive memory usage in CRAM embed_ref=2 mode
Containers
#93:
Commit
0bead43
pushed by
daviesrob
2m 57s
develop
develop
2m 57s
View workflow file
Prevent excessive memory usage in CRAM embed_ref=2 mode
Mac CI
#227:
Commit
0bead43
pushed by
daviesrob
11m 22s
develop
develop
11m 22s
View workflow file
Prevent excessive memory usage in CRAM embed_ref=2 mode
Windows/MinGW-W64 CI
#706:
Commit
0bead43
pushed by
daviesrob
5m 30s
develop
develop
5m 30s
View workflow file
Prevent excessive memory usage in CRAM embed_ref=2 mode
VMs
#93:
Commit
0bead43
pushed by
daviesrob
3m 58s
develop
develop
3m 58s
View workflow file
Prevent excessive memory usage in CRAM embed_ref=2 mode
linux CI
#227:
Commit
0bead43
pushed by
daviesrob
3m 18s
develop
develop
3m 18s
View workflow file
Cram embed_ref=2 and huffman optimisation
Windows/MinGW-W64 CI
#705:
Pull request
#2082
synchronize by
jkbonfield
5m 17s
jkbonfield:cram_embed_ref2_opt
jkbonfield:cram_embed_ref2_opt
5m 17s
View #2082
View workflow file
Cram embed_ref=2 and huffman optimisation
linux CI
#226:
Pull request
#2082
synchronize by
jkbonfield
3m 10s
jkbonfield:cram_embed_ref2_opt
jkbonfield:cram_embed_ref2_opt
3m 10s
View #2082
View workflow file
Cram embed_ref=2 and huffman optimisation
Containers
#92:
Pull request
#2082
synchronize by
jkbonfield
3m 30s
jkbonfield:cram_embed_ref2_opt
jkbonfield:cram_embed_ref2_opt
3m 30s
View #2082
View workflow file
Cram embed_ref=2 and huffman optimisation
Mac CI
#226:
Pull request
#2082
synchronize by
jkbonfield
10m 9s
jkbonfield:cram_embed_ref2_opt
jkbonfield:cram_embed_ref2_opt
10m 9s
View #2082
View workflow file
Cram embed_ref=2 and huffman optimisation
VMs
#92:
Pull request
#2082
synchronize by
jkbonfield
4m 39s
jkbonfield:cram_embed_ref2_opt
jkbonfield:cram_embed_ref2_opt
4m 39s
View #2082
View workflow file
Use bash and pipefail for tests using simple_test_driver.sh
Mac CI
#225:
Pull request
#2083
opened by
daviesrob
10m 47s
daviesrob:pipefail
daviesrob:pipefail
10m 47s
View #2083
View workflow file
Use bash and pipefail for tests using simple_test_driver.sh
Containers
#91:
Pull request
#2083
opened by
daviesrob
2m 49s
daviesrob:pipefail
daviesrob:pipefail
2m 49s
View #2083
View workflow file
Use bash and pipefail for tests using simple_test_driver.sh
Windows/MinGW-W64 CI
#704:
Pull request
#2083
opened by
daviesrob
4m 14s
daviesrob:pipefail
daviesrob:pipefail
4m 14s
View #2083
View workflow file
Use bash and pipefail for tests using simple_test_driver.sh
VMs
#91:
Pull request
#2083
opened by
daviesrob
3m 38s
daviesrob:pipefail
daviesrob:pipefail
3m 38s
View #2083
View workflow file
Use bash and pipefail for tests using simple_test_driver.sh
linux CI
#225:
Pull request
#2083
opened by
daviesrob
3m 43s
daviesrob:pipefail
daviesrob:pipefail
3m 43s
View #2083
View workflow file
Fix infinite loop in zlib_mem_inflate() when uncomp_size=1 (CWE-835)
linux CI
#224:
Pull request
#2081
synchronize by
lrycro
Action required
lrycro:fix/cram-zlib-mem-inflate-infinite-loop
lrycro:fix/cram-zlib-mem-inflate-infinite-loop
Action required
View #2081
View workflow file
Fix infinite loop in zlib_mem_inflate() when uncomp_size=1 (CWE-835)
Containers
#90:
Pull request
#2081
synchronize by
lrycro
Action required
lrycro:fix/cram-zlib-mem-inflate-infinite-loop
lrycro:fix/cram-zlib-mem-inflate-infinite-loop
Action required
View #2081
View workflow file
Fix infinite loop in zlib_mem_inflate() when uncomp_size=1 (CWE-835)
Mac CI
#224:
Pull request
#2081
synchronize by
lrycro
Action required
lrycro:fix/cram-zlib-mem-inflate-infinite-loop
lrycro:fix/cram-zlib-mem-inflate-infinite-loop
Action required
View #2081
View workflow file
Fix infinite loop in zlib_mem_inflate() when uncomp_size=1 (CWE-835)
VMs
#90:
Pull request
#2081
synchronize by
lrycro
Action required
lrycro:fix/cram-zlib-mem-inflate-infinite-loop
lrycro:fix/cram-zlib-mem-inflate-infinite-loop
Action required
View #2081
View workflow file
Fix infinite loop in zlib_mem_inflate() when uncomp_size=1 (CWE-835)
Windows/MinGW-W64 CI
#703:
Pull request
#2081
synchronize by
lrycro
Action required
lrycro:fix/cram-zlib-mem-inflate-infinite-loop
lrycro:fix/cram-zlib-mem-inflate-infinite-loop
Action required
View #2081
View workflow file
Fix infinite loop in zlib_mem_inflate() when uncomp_size=1 (CWE-835)
linux CI
#223:
Pull request
#2081
synchronize by
lrycro
Action required
lrycro:fix/cram-zlib-mem-inflate-infinite-loop
lrycro:fix/cram-zlib-mem-inflate-infinite-loop
Action required
View #2081
View workflow file
Fix infinite loop in zlib_mem_inflate() when uncomp_size=1 (CWE-835)
VMs
#89:
Pull request
#2081
synchronize by
lrycro
Action required
lrycro:fix/cram-zlib-mem-inflate-infinite-loop
lrycro:fix/cram-zlib-mem-inflate-infinite-loop
Action required
View #2081
View workflow file
Fix infinite loop in zlib_mem_inflate() when uncomp_size=1 (CWE-835)
Mac CI
#223:
Pull request
#2081
synchronize by
lrycro
Action required
lrycro:fix/cram-zlib-mem-inflate-infinite-loop
lrycro:fix/cram-zlib-mem-inflate-infinite-loop
Action required
View #2081
View workflow file
Fix infinite loop in zlib_mem_inflate() when uncomp_size=1 (CWE-835)
Containers
#89:
Pull request
#2081
synchronize by
lrycro
Action required
lrycro:fix/cram-zlib-mem-inflate-infinite-loop
lrycro:fix/cram-zlib-mem-inflate-infinite-loop
Action required
View #2081
View workflow file
Fix infinite loop in zlib_mem_inflate() when uncomp_size=1 (CWE-835)
Windows/MinGW-W64 CI
#702:
Pull request
#2081
synchronize by
lrycro
Action required
lrycro:fix/cram-zlib-mem-inflate-infinite-loop
lrycro:fix/cram-zlib-mem-inflate-infinite-loop
Action required
View #2081
View workflow file
Previous
1
2
3
4
5
…
40
41
Next
You can’t perform that action at this time.