Migrate narfmap/hashtable to topic channels - #12445

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xHaMMaDy wants to merge 20 commits into

nf-core:masterfrom

xHaMMaDy:narfmap_hashtable_topics_migration

Commits on Jul 27, 2026

Migrate narfmap hashtable to topic channels
xHaMMaDy
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c84c480
Stabilize narfmap align snapshots
xHaMMaDy
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9706f1f
Normalise narfmap BAM snapshot checks
xHaMMaDy
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24ee334

Commits on Jul 28, 2026

Sanitise narfmap hashtable snapshots
xHaMMaDy
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0299923
Update narfmap hashtable sanitized snapshot
xHaMMaDy
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7456919
Merge remote-tracking branch 'origin/master' into narfmap_hashtable_topics_migration
xHaMMaDy
committed
918a21f

Commits on Jul 29, 2026

Use nft-bam for narfmap align BAM checks
xHaMMaDy
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057b4e1
Update narfmap align Samtools version metadata
xHaMMaDy
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080fce6
Escape narfmap align Samtools version anchor
xHaMMaDy
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7dd40a8
Match narfmap align escaped version metadata
xHaMMaDy
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cdd2d2d
Update narfmap BAM snapshot checks
xHaMMaDy
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13ee61e
Use narfmap BAM read count snapshots
xHaMMaDy
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3d84c93
Use narfmap BAM file type snapshots
xHaMMaDy
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b3124bb
Use lenient BAM parsing in narfmap segfault test
xHaMMaDy
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78c26e3
Avoid parsing invalid narfmap segfault BAM
xHaMMaDy
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3023598

Commits on Aug 3, 2026

Address narfmap align review feedback
xHaMMaDy
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1382f3c
Update narfmap align snapshots after review
xHaMMaDy
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e642e40
Fix narfmap align lint after review
xHaMMaDy
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f7c9ea1
Remove incomplete narfmap container metadata
xHaMMaDy
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255a94e
Merge remote-tracking branch 'origin/master' into narfmap_hashtable_topics_migration
xHaMMaDy
committed
b85711b