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Chunked fused engine returns silently wrong two-population statistics

Status: Open.

#189 In kr-colab/pg_gpu;

· andrewkern opened on Aug 17, 2026

Weir-Cockerham has no shared per-site decomposition, so the scatter engine cannot compute fst_wc

Status: Open.

#187 In kr-colab/pg_gpu;

· andrewkern opened on Aug 17, 2026

windowed_analysis with multi-populations only returns pi for one of them

Status: Open.

#185 In kr-colab/pg_gpu;

· mufernando opened on Aug 14, 2026

Unify window membership: _build_scatter_indices and the fused per-site block are two implementations of one rule

Status: Open.

#183 In kr-colab/pg_gpu;

· andrewkern opened on Aug 14, 2026

Variant-subset methods drop sample names and QC fields

Status: Open.

#181 In kr-colab/pg_gpu;

· nspope opened on Aug 12, 2026

compute_region anchors windows at the first variant, not at the region start

Status: Open.

#179 In kr-colab/pg_gpu;

· andrewkern opened on Aug 10, 2026

Stale committed outputs in pg_gpu_skill_walkthrough.ipynb after the multiallelic pass

Status: Open.

#173 In kr-colab/pg_gpu;

· andrewkern opened on Aug 6, 2026

return number of accessible bases in windowed_analysis

Status: Open.

#171 In kr-colab/pg_gpu;

· mufernando opened on Aug 6, 2026

windowed_analysis does not support GenotypeMatrix

Status: Open.

#170 In kr-colab/pg_gpu;

· mufernando opened on Aug 5, 2026

PCA on genotypes

Status: Open.

#169 In kr-colab/pg_gpu;

· mufernando opened on Aug 3, 2026

pg-gpu needs to know if HaplotypeMatrix is phased or not

Status: Open.

#168 In kr-colab/pg_gpu;

· mufernando opened on Jul 31, 2026

Fused windowed engine: boundary variants are assigned to the wrong window by bin_idx

Status: Open.

#166 In kr-colab/pg_gpu;

· nspope opened on Jul 30, 2026