chore: Upgrade Python requirements

[edx-requirements-bot]

Python requirements update. Please review the changelogs for the upgraded packages.

Deleted obsolete pull_requests:
#362

[edx-requirements-bot]

List of packages in the PR without any issue.

• beautifulsoup4 changes from 4.14.3 to 4.15.0
• build changes from 1.4.2 to 1.5.0
• cachetools changes from 7.0.5 to 7.1.4
• certifi changes from 2026.2.25 to 2026.5.20
• click changes from 8.3.2 to 8.4.1
• coverage changes from 7.13.5 to 7.14.1
• coverage[toml] changes from 7.13.5 to 7.14.1
• distlib changes from 0.4.0 to 0.4.2
• django changes from 5.2.13 to 5.2.15
• edx-lint changes from 6.0.0 to 6.1.0
• filelock changes from 3.25.2 to 3.29.1
• idna changes from 3.11 to 3.18
• jaraco-functools changes from 4.4.0 to 4.5.0
• lxml changes from 6.0.2 to 6.1.1
• lxml-html-clean changes from 0.4.4 to 0.4.5
• lxml[html-clean] changes from 6.0.2 to 6.1.1
• mako changes from 1.3.10 to 1.3.12
• markdown-it-py changes from 4.0.0 to 4.2.0
• more-itertools changes from 11.0.1 to 11.1.0
• nh3 changes from 0.3.4 to 0.3.5
• packaging changes from 26.0 to 26.2
• pip changes from 26.0.1 to 26.1.2
• platformdirs changes from 4.9.4 to 4.10.0
• pyjwt[crypto] changes from 2.12.1 to 2.13.0
• pymongo changes from 4.16.0 to 4.17.0
• pyproject-api changes from 1.10.0 to 1.10.1
• pytest changes from 9.0.2 to 9.0.3
• python-discovery changes from 1.2.1 to 1.4.0
• pytz changes from 2026.1.post1 to 2026.2
• requests changes from 2.33.1 to 2.34.2
• snowballstemmer changes from 3.0.1 to 3.1.1
• soupsieve changes from 2.8.3 to 2.8.4
• stevedore changes from 5.7.0 to 5.8.0
• tomlkit changes from 0.14.0 to 0.15.0
• tox changes from 4.52.0 to 4.55.1
• typeguard changes from 4.5.1 to 4.5.2
• urllib3 changes from 2.6.3 to 2.7.0
• virtualenv changes from 21.2.0 to 21.4.2
• webob changes from 1.8.9 to 1.8.10
• wheel changes from 0.46.3 to 0.47.0
• xblock changes from 6.0.0 to 6.1.0

[edx-requirements-bot]

These Packages need manual review..

• [MAJOR] cryptography changes from 46.0.6 to 48.0.0
• [MAJOR] rich changes from 14.3.3 to 15.0.0
• [MAJOR] simplejson changes from 3.20.2 to 4.1.1
• [MAJOR] zipp changes from 3.23.0 to 4.1.0

[edx-requirements-bot]

Closing obsolete PR.