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run: Support unmanaged pathogen repositories with local paths#476

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tsibley merged 2 commits into
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trs/run/unmanaged-pathogens
Sep 23, 2025
Merged

run: Support unmanaged pathogen repositories with local paths#476
tsibley merged 2 commits into
masterfrom
trs/run/unmanaged-pathogens

run: Explicit pass --directory to Snakemake to override "workdir:" di…

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