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Feature/pystan v2.19 #139

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fe5a2d6
Update to pystan 2.19
guiguem Aug 7, 2019
060dd9f
Adding the Development tools installation in the dockerfile; now runn…
guiguem Aug 7, 2019
f7bd928
Bypassing the missing pystan installation for travis
guiguem Aug 8, 2019
a929d96
no need to use pip3
guiguem Aug 8, 2019
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4 changes: 3 additions & 1 deletion Dockerfile
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Original file line number Diff line number Diff line change
@@ -1,4 +1,4 @@
FROM project8/p8compute_dependencies:v0.4.0 as morpho_common
FROM project8/p8compute_dependencies:v0.7.0 as morpho_common

ENV MORPHO_TAG=v2.3.3
ENV MORPHO_BUILD_PREFIX=/usr/local/p8/morpho/$MORPHO_TAG
Expand Down Expand Up @@ -35,3 +35,5 @@ RUN source $MORPHO_BUILD_PREFIX/setup.sh &&\
FROM morpho_common

COPY --from=morpho_done $MORPHO_BUILD_PREFIX $MORPHO_BUILD_PREFIX

RUN yum groupinstall -y 'Development Tools'
2 changes: 1 addition & 1 deletion setup.py
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Expand Up @@ -21,7 +21,7 @@
requirements = []
extras_require = {
'core': ['uproot>=2.8.13', 'colorlog', 'PyYAML>=3.13', 'pyparsing>=2.1.5',
'pystan==2.17.1.0', 'dnspython==1.12.0',
'pystan==2.19.0.0', 'dnspython==1.12.0',
'pbr==0.10.8', 'cycler==0.10.0', 'lz4', 'six', 'asteval'],
'doc': ['sphinx', 'sphinx_rtd_theme', 'sphinxcontrib-programoutput', 'six', 'colorlog']
}
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2 changes: 2 additions & 0 deletions tests/test.sh
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@@ -1,5 +1,7 @@
#!/bin/bash

pip install pystan==2.19.0

cd IO && python IO_test.py && cd ..
cd misc && python misc_test.py && cd ..
cd sampling && python sampling_test.py && cd ..