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Pull requests: loculus-project/loculus

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218 Open 4,566 Closed
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Pull requests list

chore(deps): bump sharp from 0.34.3 to 0.35.3 in /website dependencies Pull requests that update a dependency file javascript Pull requests that update Javascript code
#7000 opened Jul 28, 2026 by dependabot Bot Loading…
chore(deps-dev): bump fast-uri from 3.1.2 to 3.1.4 in /website dependencies Pull requests that update a dependency file javascript Pull requests that update Javascript code
#6999 opened Jul 28, 2026 by dependabot Bot Loading…
chore(deps): bump svgo from 4.0.1 to 4.0.2 in /website dependencies Pull requests that update a dependency file javascript Pull requests that update Javascript code
#6998 opened Jul 28, 2026 by dependabot Bot Loading…
fix(auth): harden OIDC login flow and redirect handling deployment Code changes targetting the deployment infrastructure preview Triggers a deployment to argocd website Tasks related to the web application
#6994 opened Jul 27, 2026 by snehasaisneha Member Loading…
@snehasaisneha
5
feat(deposition): use foreign key constraints and use ORM with transactions and joins in more places deposition related to ENA/INSDC deposition
#6989 opened Jul 26, 2026 by anna-parker Contributor • Draft
3 tasks
1
feat!(config, prepro, file-processing): create new file-processing microservice which handles file validation deployment Code changes targetting the deployment infrastructure preprocessing Issues related to the preprocessing component preview Triggers a deployment to argocd
#6987 opened Jul 25, 2026 by anna-parker Contributor Loading…
3 tasks done
1
17
fix(backend): display preprint servers in citations backend related to the loculus backend component
#6982 opened Jul 24, 2026 by theosanderson Member • Draft
1
7
feat(ingest): enrich mirrored GenBank metadata
#6981 opened Jul 24, 2026 by theosanderson Member • Draft
12
feat(prepro): refactor - split args into function args and entry-specific level, internally supplied context arguments which are now fully typed preprocessing Issues related to the preprocessing component
#6980 opened Jul 24, 2026 by anna-parker Contributor Loading…
3 tasks
4
chore(backend): Upgrade spring boot from v3.5 to v4, exposed from v0.61 to v1 backend related to the loculus backend component
#6974 opened Jul 23, 2026 by tombch Collaborator • Draft
3 tasks
4
feat(website): revise defaults to single-sequence form (bulk-first tabs, Preview tag) preview Triggers a deployment to argocd
#6973 opened Jul 23, 2026 by theosanderson-agent Collaborator • Draft
3
feat(website): default revision to the single sequence form preview Triggers a deployment to argocd website Tasks related to the web application
#6964 opened Jul 22, 2026 by theosanderson-agent Collaborator Loading…
14
chore(deps-dev): bump eslint-plugin-astro from 1.7.0 to 3.0.1 in /website dependencies Pull requests that update a dependency file javascript Pull requests that update Javascript code
#6961 opened Jul 22, 2026 by dependabot Bot Loading…
chore(deps): bump react-dom and @types/react-dom in /keycloak/keycloakify dependencies Pull requests that update a dependency file javascript Pull requests that update Javascript code
#6959 opened Jul 22, 2026 by dependabot Bot Loading…
chore(deps): bump the minorandpatch group in /keycloak/keycloakify with 10 updates dependencies Pull requests that update a dependency file javascript Pull requests that update Javascript code
#6958 opened Jul 22, 2026 by dependabot Bot Loading…
chore(deps): bump types-psycopg2 from 2.9.21.20251012 to 2.9.21.20260712 in /ena-submission conda Pull requests that update conda code dependencies Pull requests that update a dependency file
#6952 opened Jul 22, 2026 by dependabot Bot Loading…
chore(deps): bump the minorandpatch group in /ena-submission with 17 updates conda Pull requests that update conda code dependencies Pull requests that update a dependency file
#6951 opened Jul 22, 2026 by dependabot Bot Loading…
chore(deps): bump the minorandpatch group across 1 directory with 3 updates conda Pull requests that update conda code dependencies Pull requests that update a dependency file
#6950 opened Jul 22, 2026 by dependabot Bot Loading…
feat(website): add a "Modify entries" menu and fix the search action row layout website Tasks related to the web application
#6938 opened Jul 21, 2026 by theosanderson-agent Collaborator • Draft
2 of 3 tasks
1
feat(prepro): conditional metadata field requirements deployment Code changes targetting the deployment infrastructure preprocessing Issues related to the preprocessing component preview Triggers a deployment to argocd
#6930 opened Jul 20, 2026 by maverbiest Contributor Loading…
2 tasks done
1
27
fix(backend): spool released exports safely backend related to the loculus backend component bug Something isn't working deployment Code changes targetting the deployment infrastructure performance preview Triggers a deployment to argocd
#6926 opened Jul 20, 2026 by clonder Contributor Loading…
1
@clonder
3
feat!(website, backend): Update bulk file submission/revision format to use metadata file backend related to the loculus backend component preview Triggers a deployment to argocd website Tasks related to the web application
#6922 opened Jul 17, 2026 by tombch Collaborator Loading…
3 tasks
1
6
chore(deployment): richer diagnostics collection for e2e integration tests
#6921 opened Jul 16, 2026 by corneliusroemer Contributor • Draft
1
chore(e2e): deflake known rare console error about CORS policy e2e E2E test related
#6917 opened Jul 16, 2026 by corneliusroemer Contributor Loading…
2
feat!(config, file-processing): add deacon to file-processing service deployment Code changes targetting the deployment infrastructure preprocessing Issues related to the preprocessing component preview Triggers a deployment to argocd
#6916 opened Jul 16, 2026 by anna-parker Contributor Loading…
3 tasks done
26
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