Unify metadata path between uncompressed and compressed - #300
Open
hmaarrfk wants to merge 1 commit into
Open
Conversation
Compressed TIFF stacks take a different code path than uncompressed ones, and that path never applies the slice labels, ROI, overlay or properties. TiffDecoder already parses all of them, they just get dropped. Our users mostly hit this as unnamed channels in multichannel images, which makes them quite hard to tell apart. This applies the same metadata that FileOpener.openStack() already applies for uncompressed stacks, so nothing changes for uncompressed files. Please let me know what you think.
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
Add this suggestion to a batch that can be applied as a single commit.This suggestion is invalid because no changes were made to the code.Suggestions cannot be applied while the pull request is closed.Suggestions cannot be applied while viewing a subset of changes.Only one suggestion per line can be applied in a batch.Add this suggestion to a batch that can be applied as a single commit.Applying suggestions on deleted lines is not supported.You must change the existing code in this line in order to create a valid suggestion.Outdated suggestions cannot be applied.This suggestion has been applied or marked resolved.Suggestions cannot be applied from pending reviews.Suggestions cannot be applied on multi-line comments.Suggestions cannot be applied while the pull request is queued to merge.Suggestion cannot be applied right now. Please check back later.
Compressed TIFF stacks take a different code path than uncompressed ones, and that path never applies the slice labels, ROI, overlay or properties. TiffDecoder already parses all of them, they just get dropped.
Our users mostly hit this as unnamed channels in multichannel images, which makes them quite hard to tell apart.
This applies the same metadata that FileOpener.openStack() already applies for uncompressed stacks, so nothing changes for uncompressed files. Please let me know what you think.