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FATAL ERROR ML150008291L1C001R00101473806 ML150008291L1C001R00101473960 Be sure that the sam files have the same read order If using Bowtie2 or Hisat2 add the --reorder option

Status: Open.

#960 In deeptools/HiCExplorer;

· ZED-rookie opened on Mar 18, 2026

hicCorrelate - Can the size of the output image/svg/pdf be adjusted to clearly display the sample names and their corresponding information?

Status: Open.

#959 In deeptools/HiCExplorer;

· nooong opened on Mar 2, 2026

Understanding hicDifferentialTAD output & directionality

Status: Open.

#958 In deeptools/HiCExplorer;

· imacarth opened on Feb 5, 2026

question about buildMatrixMethods.py

Status: Open.

#957 In deeptools/HiCExplorer;

· jrw510 opened on Feb 2, 2026

High align rate but Low reported pairs

Status: Open.

#956 In deeptools/HiCExplorer;

· hcph opened on Jan 7, 2026

UnboundLocalError: local variable 'out_bam_file' referenced before assignment

Status: Open.

#954 In deeptools/HiCExplorer;

· NJU-Bio-Info opened on Nov 26, 2025

Unequal number of contacts after hicNormalize --normalize smallest

Status: Open.

#953 In deeptools/HiCExplorer;

· Ma-Mes opened on Nov 20, 2025

hicConvertFormat shall use "HDF5::MCOOL" rather than "HDF5::Cooler" for mcool hdf attribute format

Status: Open.

#952 In deeptools/HiCExplorer;

· Fan-iX opened on Nov 14, 2025

Is the bias(weight) obtained for each bin by the kr method of hicCorrectMatrix a division bias(weight)?

Status: Open.

#951 In deeptools/HiCExplorer;

· oganesson76 opened on Sep 25, 2025

Range of balance correction

Status: Open.

#950 In deeptools/HiCExplorer;

· oganesson76 opened on Sep 11, 2025

Does it support no enzyme cleavage site ?

Status: Open.

#949 In deeptools/HiCExplorer;

· normal-154 opened on Sep 8, 2025

Persistent low-coverage “blue stripes” in Hi-C contact maps (dm6)

Status: Open.

#948 In deeptools/HiCExplorer;

· Cathmyt opened on Aug 13, 2025