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collaborativebioinformatics

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  1. Mosaicome Mosaicome Public

    Shell 13 3

  2. Sniphles Sniphles Public

    Sniphles is a read-based phasing approach for phased variant calling of structural variants.

    Python 12 2

  3. GeneVar GeneVar Public

    Jupyter Notebook 12 3

  4. STRdust STRdust Public

    Python 12 3

  5. BioGraphRAG BioGraphRAG Public

    Implement a system to use GNN and/or LLM to use knowledge graphs to integrate literature with knowledge graphs made from large public datasets (CIVIC, TCGA, CPTAC)

    Python 10 2

  6. nibSV nibSV Public

    Nim 9 4

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