refactor: modularize configuration system and implement safe atomic file I/O#10
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…ile I/O - Split internal/config/env.go into dedicated config.go, io.go, and resolve.go - Implement ReadFileSafely and atomic file write system via temp files for security - Refactor engine components to use new config structures - Add CI workflow and cleanup outdated wiki pages
![github-advanced-security[bot]](https://avatars.githubusercontent.com/in/57789?s=60&v=4){kind=small}
…ecture documentation
…ls into separate file
…t, process locking, and gitignore management
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Split internal/config/env.go into dedicated config.go, io.go, and resolve.go
Implement ReadFileSafely and atomic file write system via temp files for security
Refactor engine components to use new config structures
Add CI workflow and cleanup outdated wiki pages