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Fix bugs, add tests, and improve performance
- #127
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Fix bugs, add tests, and improve performance
#127
pierpal
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PalamaraLab/threads:optimize
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Commits on Mar 16, 2026
Fix bugs, add tests, and improve performance
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Commits on Mar 17, 2026
Add OpenMP multithreading, batch NumPy API, and lazy imports for inference speedup
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Tree multiply optimizations for ThreadingInstructions
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Merge remote optimize: keep local OpenMP, vectorized self-ref, batch multiply
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Add numpy batch tree multiply bindings
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Fix self-referencing target bugs and add comprehensive test suite
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Optimize Python-side performance in convert, map, and allele_ages
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Commits on Mar 18, 2026
Optimize Python/C++ boundary and remove heavy dependencies
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Replace ray with stdlib multiprocessing and add optional dependency error messages
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