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NLM Division of Intramural Research

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  1. TPMCalculator TPMCalculator Public

    TPMCalculator quantifies mRNA abundance directly from the alignments by parsing BAM files

    C++ 138 34

  2. vadr vadr Public

    Viral Annotation DefineR: classification and annotation of viral sequences based on RefSeq annotation

    Perl 115 27

  3. BAMscale BAMscale Public

    BAMscale is a one-step tool for either 1) quantifying and normalizing the coverage of peaks or 2) generated scaled BigWig files for easy visualization of commonly used DNA-seq capture based methods.

    C 74 17

  4. pm4ngs pm4ngs Public

    Project Manager for NGS data analysis

    Python 31 10

  5. ribovore ribovore Public

    Perl 17 6

  6. gtax gtax Public

    GTax python package provides tools for the creation of the GTax sequence-based database. This database includes one assembly per organism deposited in the NCBI Genomes database.

    Python 7 4

Repositories

Showing 10 of 16 repositories
  • vadr Public

    Viral Annotation DefineR: classification and annotation of viral sequences based on RefSeq annotation

    NLM-DIR/vadr’s past year of commit activity
    Perl 115 27 10 0 Updated Jun 11, 2026
  • NLM-DIR/CorpusBenchmarking’s past year of commit activity
    Python 1 0 0 0 Updated Jun 5, 2026
  • Magic2 Public

    Acedb object oriented database engine and AceView/MAGIC RNA_seq pipeline, NCBI/NLM/NIH

    NLM-DIR/Magic2’s past year of commit activity
    C 5 5 0 0 Updated Jun 4, 2026
  • pm4ngs Public

    Project Manager for NGS data analysis

    NLM-DIR/pm4ngs’s past year of commit activity
    Python 31 10 0 9 Updated May 19, 2026
  • NLM-DIR/ctcae-ae-tracking’s past year of commit activity
    Python 1 0 0 0 Updated Mar 9, 2026
  • ribovore Public
    NLM-DIR/ribovore’s past year of commit activity
    Perl 17 6 3 0 Updated Jan 29, 2026
  • TPMCalculator Public

    TPMCalculator quantifies mRNA abundance directly from the alignments by parsing BAM files

    NLM-DIR/TPMCalculator’s past year of commit activity
    C++ 138 34 15 0 Updated Jan 28, 2026
  • gtax Public

    GTax python package provides tools for the creation of the GTax sequence-based database. This database includes one assembly per organism deposited in the NCBI Genomes database.

    NLM-DIR/gtax’s past year of commit activity
    Python 7 4 2 0 Updated Jan 28, 2026
  • BAMscale Public

    BAMscale is a one-step tool for either 1) quantifying and normalizing the coverage of peaks or 2) generated scaled BigWig files for easy visualization of commonly used DNA-seq capture based methods.

    NLM-DIR/BAMscale’s past year of commit activity
    C 74 17 1 1 Updated Dec 4, 2024
  • histonedb Public
    NLM-DIR/histonedb’s past year of commit activity
    JavaScript 3 10 0 4 Updated Apr 5, 2024

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