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fix: Derive norm count subtype internally - #11

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kelly-sovacool merged 5 commits into
mainfrom
dev-subCount
Aug 4, 2026
Merged

fix: Derive norm count subtype internally#11
kelly-sovacool merged 5 commits into
mainfrom
dev-subCount

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@phoman14

@phoman14 phoman14 commented Aug 4, 2026

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Changes

  • Derive sub_count_type = "voom" internally when count_type is norm.
  • Stop exposing the default sub_count_type parameter in the Code Ocean app panel or CLI.
  • Add tests that run main.R with raw, filt, norm, and batch count types.

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PR Checklist

(Strikethrough any points that are not applicable.)

  • This comment contains a description of changes with justifications, with any relevant issues linked.
  • Run the capsule in Code Ocean and ensure it completes successfully with no errors.
  • Update CHANGELOG.md with a short description of any user-facing changes and reference the PR number. Follow the style described in https://style.tidyverse.org/news.html
  • The tests workflow succeeds on the latest commit.

@phoman14
phoman14 requested a review from kelly-sovacool August 4, 2026 02:47
@kelly-sovacool kelly-sovacool changed the title Derive norm count subtype internally fix: Derive norm count subtype internally Aug 4, 2026
@kelly-sovacool
kelly-sovacool enabled auto-merge (squash) August 4, 2026 14:32
@kelly-sovacool
kelly-sovacool merged commit 5397821 into main Aug 4, 2026
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@kelly-sovacool
kelly-sovacool deleted the dev-subCount branch August 4, 2026 14:34
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2 participants