Skip to content

Derive norm count subtype internally - #10

Closed
phoman14 wants to merge 2 commits into
mainfrom
dev-homan
Closed

Derive norm count subtype internally#10
phoman14 wants to merge 2 commits into
mainfrom
dev-homan

Conversation

@phoman14

@phoman14 phoman14 commented Aug 4, 2026

Copy link
Copy Markdown
Member

Changes

  • Derive sub_count_type = "voom" internally when count_type is norm.
  • Stop exposing the default sub_count_type parameter in the Code Ocean app panel or CLI.
  • Add tests that run main.R with raw, filt, norm, and batch count types.

Issues

No linked issues.

PR Checklist

(Strikethrough any points that are not applicable.)

  • This comment contains a description of changes with justifications, with any relevant issues linked.
  • Run the capsule in Code Ocean and ensure it completes successfully with no errors.
  • Update CHANGELOG.md with a short description of any user-facing changes and reference the PR number. Follow the style described in https://style.tidyverse.org/news.html
  • The tests workflow succeeds on the latest commit.

@phoman14
phoman14 requested a review from kelly-sovacool August 4, 2026 02:28
@phoman14 phoman14 closed this Aug 4, 2026
@phoman14
phoman14 deleted the dev-homan branch August 4, 2026 02:45
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment

Labels

None yet

Projects

None yet

Development

Successfully merging this pull request may close these issues.

1 participant