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Fix plot_approach_figures execution during book build #86

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Fix plot_approach_figures execution during book build #86

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001f1aa
Fix plot_approach_figures execution during book build
eurunuela Jun 9, 2026
1a0bd21
Fetch background transform/T1w in download step instead of guarding b…
eurunuela Jun 10, 2026
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2 changes: 2 additions & 0 deletions content/00_Download_Data.md
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Expand Up @@ -23,4 +23,6 @@ cd ../data/ds006185
datalad get -J5 sub-24053/ses-1/func/sub-24053_ses-1_task-rat_dir-PA_run-01_echo-*
datalad get sub-24053/ses-1/func/sub-24053_ses-1_task-rat_dir-PA_run-01_part-mag_desc-brain_mask.nii.gz
datalad get sub-24053/ses-1/func/sub-24053_ses-1_task-rat_dir-PA_run-01_part-mag_desc-confounds_timeseries.tsv
datalad get sub-24053/ses-1/func/sub-24053_ses-1_task-rat_dir-PA_run-01_from-boldref_to-T1w_mode-image_desc-coreg_xfm.txt
datalad get sub-24053/ses-1/anat/sub-24053_ses-1_rec-norm_desc-preproc_T1w.nii.gz
```
4 changes: 4 additions & 0 deletions content/plot_approach_figures.md
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Expand Up @@ -35,13 +35,17 @@ from tedana.utils import make_adaptive_mask

data_path = os.path.abspath('../data')

func_dir = os.path.join(data_path, "ds006185/sub-24053/ses-1/func/")
ted_dir = os.path.join(data_path, "tedana")
```

## Load data
```{code-cell} ipython3
:tags: [hide-cell]
data = load_pafin(data_path)
# load_pafin returns echo_times as a list; this chapter does array arithmetic on
# it (e.g. -1 * echo_times), so coerce to an array once here.
data['echo_times'] = np.asarray(data['echo_times'])

# Background anatomical image
anat_dir = os.path.join(data_path, "ds006185/sub-24053/ses-1/anat/")
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