Issues · KrishnaswamyLab/PHATE · GitHub

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The PHATE Operator get's stuck in the landmark operation when using precomputed `knn_dist`

#175

· bjoaofelipe opened

on Mar 3, 2026

Update PHATE documentation

#173

· MattScicluna opened

on Jan 26, 2026

PHATE incompatible with NumPy ≥2.0 despite requirement specifying numpy>=1.16.0

#169

· nishuang83 opened

on Oct 25, 2025

memory requirement for large-ish dataset

#155

· yanlingpan opened

on May 30, 2025

Cannot import PHATE

#154

· mmr181 opened

on May 22, 2025

EBdata used for trajectory inference？

#150

· Han-zh210 opened

on Dec 27, 2024

How does PHATE handle new data?

#147

· wsk-byun opened

on Nov 9, 2024

What is happening in mds.method = "classic"?

#145

· JayaniLakshika opened

on Sep 6, 2024

Providing init to the phateR implementation only saves up time if only the parameter t is changing but not other parameters?

#143

· erzakiev opened

on Apr 16, 2024

Intrinsic dimension of PHATE embedding identifes branches

#142

· YYT1002 opened

on Mar 28, 2024

Support more graphs for phate.fit

#141

· dsm-72 opened

on Dec 9, 2023

Error: TypeError: init() got an unexpected keyword argument 'k'

#140

· handesome opened

on Sep 22, 2023