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  1. SurGen-Dataset SurGen-Dataset Public

    SurGen: 1020 H&E-stained Whole Slide Images With Survival and Genetic Markers

    Jupyter Notebook 23 3

  2. raw2features raw2features Public

    OME-Zarr whole-slide images to patch- and slide-level foundation-model embeddings - cloud-native, FAIR, model- and backend-agnostic.

    Jupyter Notebook 1 1

  3. clinical-note-error-detection clinical-note-error-detection Public

    Importance of Prompt Optimisation for Error Detection in Medical Notes Using Language Models (EACL 2026)

    Python 1

  4. cggm-mammography-classification cggm-mammography-classification Public

    Chinese Mammography Database (CMMD dataset) Deep Learning Classification Pipeline

    Jupyter Notebook 16 2

  5. cziPy cziPy Public

    Using python-bioformats to tile/patch whole slide images in .czi format (for Zeiss WSI scanners) to .png

    Python

  6. ask-cbioportal ask-cbioportal Public

    cBioPortal natural language interface

    Python