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    <title>POP:CORN Journal Club</title>
    <link>https://rilab.github.io/POPCORN.html</link>
    <description>Weekly paper discussion at the Ross-Ibarra Lab, UC Davis</description>
    <language>en-us</language>
    <lastBuildDate>Sat, 08 Aug 2026 08:18:29 +0000</lastBuildDate>
    <item>
      <title>Bishop et al preprint — A resurrection experiment reveals reduced adaptive potential in a common agricultural weed</title>
      <link>https://www.biorxiv.org/content/10.1101/2025.06.03.657543v3</link>
      <guid>https://www.biorxiv.org/content/10.1101/2025.06.03.657543v3</guid>
      <pubDate>Fri, 14 Aug 2026 00:00:00 +0000</pubDate>
    </item>
    <item>
      <title>Rees et al preprint — Joint dog and wolf genealogies reveal the evolution of the canine genome</title>
      <link>https://www.biorxiv.org/content/10.64898/2026.06.18.729863v1.abstract</link>
      <guid>https://www.biorxiv.org/content/10.64898/2026.06.18.729863v1.abstract</guid>
      <pubDate>Fri, 07 Aug 2026 00:00:00 +0000</pubDate>
    </item>
    <item>
      <title>Brielle et al preprint — Buried in two places: Lineages from elite Maya tombs also found in distant caves</title>
      <link>https://www.biorxiv.org/content/10.64898/2026.06.07.724338v1?ct=</link>
      <guid>https://www.biorxiv.org/content/10.64898/2026.06.07.724338v1?ct=</guid>
      <pubDate>Fri, 31 Jul 2026 00:00:00 +0000</pubDate>
    </item>
    <item>
      <title>Piovesan et al 2026 — Ancient oaks reveal rewilding of Mediterranean forests after the Black Death</title>
      <link>https://www.pnas.org/doi/10.1073/pnas.2529341123</link>
      <guid>https://www.pnas.org/doi/10.1073/pnas.2529341123</guid>
      <pubDate>Fri, 24 Jul 2026 00:00:00 +0000</pubDate>
    </item>
    <item>
      <title>Mattila et al preprint — Population genomic processes in Brassicaceae in the light of mating system variation</title>
      <link>https://ecoevorxiv.org/repository/view/12081/</link>
      <guid>https://ecoevorxiv.org/repository/view/12081/</guid>
      <pubDate>Fri, 17 Jul 2026 00:00:00 +0000</pubDate>
    </item>
    <item>
      <title>Zhang et al 2025 — Transposon proliferation drives genome architecture and regulatory evolution in wild and domesticated peppers</title>
      <link>https://www.nature.com/articles/s41477-025-01905-1?fromPaywallRec=false</link>
      <guid>https://www.nature.com/articles/s41477-025-01905-1?fromPaywallRec=false</guid>
      <pubDate>Fri, 10 Jul 2026 00:00:00 +0000</pubDate>
    </item>
    <item>
      <title>Madrigal-Roca et al preprint — The dynamics of "silent" variation in Mimulus guttatus: Codon usage bias and linked selection</title>
      <link>https://www.biorxiv.org/content/10.64898/2026.05.18.725996</link>
      <guid>https://www.biorxiv.org/content/10.64898/2026.05.18.725996</guid>
      <pubDate>Fri, 26 Jun 2026 00:00:00 +0000</pubDate>
    </item>
    <item>
      <title>Wang et al preprint — The dynamics of introgression across an adaptive radiation: examining hybrid speciation and parallel adaptation in North American Vitis</title>
      <link>https://www.biorxiv.org/content/10.64898/2026.02.23.707523v1</link>
      <guid>https://www.biorxiv.org/content/10.64898/2026.02.23.707523v1</guid>
      <pubDate>Fri, 05 Jun 2026 00:00:00 +0000</pubDate>
    </item>
    <item>
      <title>Pineau et al 2026 — Genomic ancestry predicts rapid responses to drought across spatiotemporal scales</title>
      <link>https://www.pnas.org/doi/10.1073/pnas.2531142123</link>
      <guid>https://www.pnas.org/doi/10.1073/pnas.2531142123</guid>
      <pubDate>Fri, 29 May 2026 00:00:00 +0000</pubDate>
    </item>
    <item>
      <title>Presgraves et al 2026 — The evolutionary genomics of meiotic drive</title>
      <link>https://academic.oup.com/mbe/article/43/2/msag020/8441737?login=false</link>
      <guid>https://academic.oup.com/mbe/article/43/2/msag020/8441737?login=false</guid>
      <pubDate>Fri, 15 May 2026 00:00:00 +0000</pubDate>
    </item>
    <item>
      <title>McFarlane et al 2026 — Selection leads to remarkable variability in the outcomes of hybridisation across replicate hybrid zones</title>
      <link>https://onlinelibrary.wiley.com/doi/10.1111/mec.17359</link>
      <guid>https://onlinelibrary.wiley.com/doi/10.1111/mec.17359</guid>
      <pubDate>Fri, 08 May 2026 00:00:00 +0000</pubDate>
    </item>
    <item>
      <title>Gaut et al 2026 — What has population genomics told us about the dynamics of selection and plant adaptation?</title>
      <link>https://rilab.github.io/POPCORN.html</link>
      <guid>https://rilab.github.io/POPCORN.html</guid>
      <pubDate>Fri, 01 May 2026 00:00:00 +0000</pubDate>
    </item>
    <item>
      <title>Mualim et al 2026 — Large future genetic diversity losses are predicted from conservation indicators even with habitat protection</title>
      <link>https://www.pnas.org/doi/10.1073/pnas.2514371123</link>
      <guid>https://www.pnas.org/doi/10.1073/pnas.2514371123</guid>
      <pubDate>Fri, 17 Apr 2026 00:00:00 +0000</pubDate>
    </item>
    <item>
      <title>Yue et al. 2026 — Maize cultivation and forest collapse over five centuries in southern China</title>
      <link>https://www.nature.com/articles/s43247-026-03224-5</link>
      <guid>https://www.nature.com/articles/s43247-026-03224-5</guid>
      <pubDate>Fri, 10 Apr 2026 00:00:00 +0000</pubDate>
    </item>
    <item>
      <title>Somerville et al 2026 — Multi-isotope analysis of mammal bones provides environmental context for the adoption of agriculture in the Tehuacan Valley of Mexico</title>
      <link>https://www.science.org/doi/full/10.1126/sciadv.adw9222</link>
      <guid>https://www.science.org/doi/full/10.1126/sciadv.adw9222</guid>
      <pubDate>Fri, 10 Apr 2026 00:00:00 +0000</pubDate>
    </item>
    <item>
      <title>Zhang et al. preprint — Recovering signatures of archaic introgression using ancestral recombination graphs</title>
      <link>https://www.biorxiv.org/content/10.64898/2026.03.03.709416v1</link>
      <guid>https://www.biorxiv.org/content/10.64898/2026.03.03.709416v1</guid>
      <pubDate>Fri, 03 Apr 2026 00:00:00 +0000</pubDate>
    </item>
    <item>
      <title>Morris et al 2026 — A sorghum pangenome reference improves global crop trait discovery</title>
      <link>https://www.nature.com/articles/s41586-026-10229-9</link>
      <guid>https://www.nature.com/articles/s41586-026-10229-9</guid>
      <pubDate>Fri, 20 Mar 2026 00:00:00 +0000</pubDate>
    </item>
    <item>
      <title>Jiang et al. Preprint — Phenotypic complexity determines the predictability of molecular convergence</title>
      <link>https://www.biorxiv.org/content/10.64898/2026.03.04.709483v1</link>
      <guid>https://www.biorxiv.org/content/10.64898/2026.03.04.709483v1</guid>
      <pubDate>Fri, 13 Mar 2026 00:00:00 +0000</pubDate>
    </item>
    <item>
      <title>Simons et al 2025 — Simple scaling laws control the genetic architectures of human complex traits</title>
      <link>https://pubmed.ncbi.nlm.nih.gov/41082512/</link>
      <guid>https://pubmed.ncbi.nlm.nih.gov/41082512/</guid>
      <pubDate>Fri, 06 Mar 2026 00:00:00 +0000</pubDate>
    </item>
    <item>
      <title>Tianlin et al preprint — The genetic architecture of local adaptation is historically contingent</title>
      <link>https://www.biorxiv.org/content/10.64898/2026.02.01.703099v1</link>
      <guid>https://www.biorxiv.org/content/10.64898/2026.02.01.703099v1</guid>
      <pubDate>Fri, 13 Feb 2026 00:00:00 +0000</pubDate>
    </item>
    <item>
      <title>James and Lascoux preprint — The effect of genome organisation on selection efficiency in two contrasted plant species</title>
      <link>https://www.biorxiv.org/content/10.64898/2025.12.19.695387v1</link>
      <guid>https://www.biorxiv.org/content/10.64898/2025.12.19.695387v1</guid>
      <pubDate>Fri, 23 Jan 2026 00:00:00 +0000</pubDate>
    </item>
    <item>
      <title>Amundson et al preprint — A deep-time landscape of plant cis-regulatory sequence evolution</title>
      <link>https://www.biorxiv.org/content/10.1101/2025.09.17.676453v1</link>
      <guid>https://www.biorxiv.org/content/10.1101/2025.09.17.676453v1</guid>
      <pubDate>Fri, 16 Jan 2026 00:00:00 +0000</pubDate>
    </item>
    <item>
      <title>Baril, Pucetti, and Croll — Historic transposon mobilisation waves create distinct pools of adaptive variants in a major crop pathogen</title>
      <link>https://www.nature.com/articles/s41467-025-64944-4</link>
      <guid>https://www.nature.com/articles/s41467-025-64944-4</guid>
      <pubDate>Fri, 12 Dec 2025 00:00:00 +0000</pubDate>
    </item>
    <item>
      <title>Braasch, Harenčár, Swope preprint — Extremely fine-scale soil heterogeneity in a rare serpentine endemic plant shapes patterns of genetic diversity</title>
      <link>https://www.authorea.com/doi/full/10.22541/au.175873518.81404075</link>
      <guid>https://www.authorea.com/doi/full/10.22541/au.175873518.81404075</guid>
      <pubDate>Fri, 05 Dec 2025 00:00:00 +0000</pubDate>
    </item>
    <item>
      <title>Spence et al 2025 — Specificity, length and luck drive gene rankings in association studies</title>
      <link>https://www.nature.com/articles/s41586-025-09703-7</link>
      <guid>https://www.nature.com/articles/s41586-025-09703-7</guid>
      <pubDate>Fri, 28 Nov 2025 00:00:00 +0000</pubDate>
    </item>
    <item>
      <title>Grundler et al 2025 — A geographic history of human genetic ancestry</title>
      <link>http://www.genescape.org/uploads/7/2/2/0/72206611/grundler_etal_2025.pdf</link>
      <guid>http://www.genescape.org/uploads/7/2/2/0/72206611/grundler_etal_2025.pdf</guid>
      <pubDate>Fri, 21 Nov 2025 00:00:00 +0000</pubDate>
    </item>
    <item>
      <title>Lopez et al 2025 — Museum Genomics Reveals Temporal Genetic Stasis and Global Genetic Diversity in Arabidopsis thaliana</title>
      <link>https://onlinelibrary.wiley.com/doi/10.1111/mec.70081</link>
      <guid>https://onlinelibrary.wiley.com/doi/10.1111/mec.70081</guid>
      <pubDate>Fri, 14 Nov 2025 00:00:00 +0000</pubDate>
    </item>
    <item>
      <title>Slalov et al 2025 — Population structure limits the use of genomic data for predicting phenotypes and managing genetic resources in forest trees</title>
      <link>https://www.pnas.org/doi/10.1073/pnas.2425691122</link>
      <guid>https://www.pnas.org/doi/10.1073/pnas.2425691122</guid>
      <pubDate>Fri, 07 Nov 2025 00:00:00 +0000</pubDate>
    </item>
    <item>
      <title>Mead et al preprint — Variation in responses to temperature across admixed genotypes of Populus trichocarpa × P.</title>
      <link>https://www.biorxiv.org/content/10.1101/2025.05.16.654548v1.full.pdf</link>
      <guid>https://www.biorxiv.org/content/10.1101/2025.05.16.654548v1.full.pdf</guid>
      <pubDate>Fri, 31 Oct 2025 00:00:00 +0000</pubDate>
    </item>
    <item>
      <title>Carey et al preprint — An X-linked sex determination mechanism in cannabis and hop</title>
      <link>https://www.biorxiv.org/content/10.1101/2024.12.09.627636v2</link>
      <guid>https://www.biorxiv.org/content/10.1101/2024.12.09.627636v2</guid>
      <pubDate>Fri, 10 Oct 2025 00:00:00 +0000</pubDate>
    </item>
    <item>
      <title>Brady et al 2025 — Genetic and environmental influences on the distributions of three chromosomal drive haplotypes in maize</title>
      <link>https://journals.plos.org/plosgenetics/article?id=10.1371/journal.pgen.1011742</link>
      <guid>https://journals.plos.org/plosgenetics/article?id=10.1371/journal.pgen.1011742</guid>
      <pubDate>Fri, 03 Oct 2025 00:00:00 +0000</pubDate>
    </item>
    <item>
      <title>Kreiner 2025 — The genetic architecture and spatiotemporal dynamics of adaptation across human-modified landscapes</title>
      <link>https://nph.onlinelibrary.wiley.com/doi/10.1111/nph.70520</link>
      <guid>https://nph.onlinelibrary.wiley.com/doi/10.1111/nph.70520</guid>
      <pubDate>Fri, 26 Sep 2025 00:00:00 +0000</pubDate>
    </item>
    <item>
      <title>Roberts et al 2025 — K-mer-based Approaches to Bridging Pangenomics and Population Genetics</title>
      <link>https://academic.oup.com/mbe/article/42/3/msaf047/8052716</link>
      <guid>https://academic.oup.com/mbe/article/42/3/msaf047/8052716</guid>
      <pubDate>Fri, 19 Sep 2025 00:00:00 +0000</pubDate>
    </item>
    <item>
      <title>Piri et al preprint — Higher order repeat structures reflect diverging evolutionary paths in maize centromeres and knobs</title>
      <link>https://www.biorxiv.org/content/10.1101/2025.01.31.635908v1</link>
      <guid>https://www.biorxiv.org/content/10.1101/2025.01.31.635908v1</guid>
      <pubDate>Fri, 12 Sep 2025 00:00:00 +0000</pubDate>
    </item>
    <item>
      <title>Anderson et al 2025 — Adaptation and gene flow are insufficient to rescue a montane plant under climate change</title>
      <link>https://www.science.org/doi/10.1126/science.adr1010</link>
      <guid>https://www.science.org/doi/10.1126/science.adr1010</guid>
      <pubDate>Fri, 29 Aug 2025 00:00:00 +0000</pubDate>
    </item>
    <item>
      <title>Manin et al 2025 — Ancient dog mitogenomes support the dual dispersal of dogs and agriculture into South America</title>
      <link>https://royalsocietypublishing.org/doi/full/10.1098/rspb.2024.2443</link>
      <guid>https://royalsocietypublishing.org/doi/full/10.1098/rspb.2024.2443</guid>
      <pubDate>Fri, 22 Aug 2025 00:00:00 +0000</pubDate>
    </item>
    <item>
      <title>Tushingham et al 2025 — Biodiversity science of ancient fisheries: Archaeological indicators of eelgrass meadow health and indigenous (Wiyot) aquaculture, Humboldt Bay, CA</title>
      <link>https://www.sciencedirect.com/science/article/pii/S0305440325001165</link>
      <guid>https://www.sciencedirect.com/science/article/pii/S0305440325001165</guid>
      <pubDate>Fri, 01 Aug 2025 00:00:00 +0000</pubDate>
    </item>
    <item>
      <title>Herklotz et al 2025 — Bimodal centromeres in pentaploid dogroses shed light on their unique meiosis</title>
      <link>https://www.nature.com/articles/s41586-025-09171-z</link>
      <guid>https://www.nature.com/articles/s41586-025-09171-z</guid>
      <pubDate>Fri, 25 Jul 2025 00:00:00 +0000</pubDate>
    </item>
    <item>
      <title>Macharia et al 2025 — Cowpea (Vigna unguiculata L. Walp.) landraces in Mozambique and neighbouring Southern African countries harbour genetic loci with potential for climate adaptation</title>
      <link>https://www.nature.com/articles/s42003-025-08227-0</link>
      <guid>https://www.nature.com/articles/s42003-025-08227-0</guid>
      <pubDate>Fri, 18 Jul 2025 00:00:00 +0000</pubDate>
    </item>
    <item>
      <title>Jing et al 2025 — Maximizing meiotic crossover rates reveals the map of Crossover Potential</title>
      <link>https://www.nature.com/articles/s41467-025-60663-y</link>
      <guid>https://www.nature.com/articles/s41467-025-60663-y</guid>
      <pubDate>Fri, 11 Jul 2025 00:00:00 +0000</pubDate>
    </item>
    <item>
      <title>Wang et al 2025 — DNA gains and losses in gigantic genomes do not track differences in transposable element-host silencing interactions</title>
      <link>https://www.nature.com/articles/s42003-025-08127-3</link>
      <guid>https://www.nature.com/articles/s42003-025-08127-3</guid>
      <pubDate>Fri, 27 Jun 2025 00:00:00 +0000</pubDate>
    </item>
    <item>
      <title>Murray et al 2025 — 00577-9)] Ancient genomes reveal demographic trajectories during the Classic Maya period</title>
      <link>https://www.cell.com/current-biology/fulltext/S0960-9822(25</link>
      <guid>https://www.cell.com/current-biology/fulltext/S0960-9822(25</guid>
      <pubDate>Fri, 13 Jun 2025 00:00:00 +0000</pubDate>
    </item>
    <item>
      <title>Sakamoto and Yeaman preprint — Maintenance of polymorphism in spatially heterogeneous</title>
      <link>https://www.biorxiv.org/content/10.1101/2025.04.25.650679v1.full.pdf</link>
      <guid>https://www.biorxiv.org/content/10.1101/2025.04.25.650679v1.full.pdf</guid>
      <pubDate>Fri, 06 Jun 2025 00:00:00 +0000</pubDate>
    </item>
    <item>
      <title>Jiang et al 2025 — Incorporating genetic load contributes to predicting Arabidopsis thaliana’s response to climate change</title>
      <link>https://www.nature.com/articles/s41467-025-58021-z</link>
      <guid>https://www.nature.com/articles/s41467-025-58021-z</guid>
      <pubDate>Fri, 30 May 2025 00:00:00 +0000</pubDate>
    </item>
    <item>
      <title>Schneemann and Welch preprint — Predicting hybrid fitness: the effects of ploidy and complex ancestry</title>
      <link>https://www.biorxiv.org/content/10.1101/2025.02.13.638087v1</link>
      <guid>https://www.biorxiv.org/content/10.1101/2025.02.13.638087v1</guid>
      <pubDate>Fri, 23 May 2025 00:00:00 +0000</pubDate>
    </item>
    <item>
      <title>Kistler et al 2025 — Historic manioc genomes illuminate maintenance of diversity under long-lived clonal cultivation</title>
      <link>https://www.science.org/doi/10.1126/science.adq0018</link>
      <guid>https://www.science.org/doi/10.1126/science.adq0018</guid>
      <pubDate>Fri, 16 May 2025 00:00:00 +0000</pubDate>
    </item>
    <item>
      <title>Ragsdale preprint — Archaic introgression and the distribution of shared variation under stabilizing selection</title>
      <link>https://www.biorxiv.org/content/10.1101/2024.08.20.608876v1</link>
      <guid>https://www.biorxiv.org/content/10.1101/2024.08.20.608876v1</guid>
      <pubDate>Fri, 09 May 2025 00:00:00 +0000</pubDate>
    </item>
    <item>
      <title>Frayer et al 2024 — Do genetic loci that cause reproductive isolation in the lab inhibit gene flow in nature?</title>
      <link>https://academic.oup.com/evolut/article/78/6/1025/7630243</link>
      <guid>https://academic.oup.com/evolut/article/78/6/1025/7630243</guid>
      <pubDate>Fri, 25 Apr 2025 00:00:00 +0000</pubDate>
    </item>
    <item>
      <title>Gibbs et al 2025 — Trait genetic architecture and population structure determine model selection for genomic prediction in natural Arabidopsis thaliana populations</title>
      <link>https://academic.oup.com/genetics/article/229/3/iyaf003/7954791</link>
      <guid>https://academic.oup.com/genetics/article/229/3/iyaf003/7954791</guid>
      <pubDate>Fri, 18 Apr 2025 00:00:00 +0000</pubDate>
    </item>
    <item>
      <title>Mohan et al 2024 — 00131-8) A three-dimensional genomics view for speciation research</title>
      <link>https://www.cell.com/trends/genetics/fulltext/S0168-9525(24</link>
      <guid>https://www.cell.com/trends/genetics/fulltext/S0168-9525(24</guid>
      <pubDate>Fri, 11 Apr 2025 00:00:00 +0000</pubDate>
    </item>
    <item>
      <title>Nie et al 2025 — Molecular regulation and domestication of parthenocarpy in cucumber</title>
      <link>https://www.nature.com/articles/s41477-024-01899-2</link>
      <guid>https://www.nature.com/articles/s41477-024-01899-2</guid>
      <pubDate>Fri, 04 Apr 2025 00:00:00 +0000</pubDate>
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