diff --git a/.github/dependabot.yml b/.github/dependabot.yml
index 7863596214b..233d0620ded 100644
--- a/.github/dependabot.yml
+++ b/.github/dependabot.yml
@@ -6,3 +6,42 @@ updates:
       interval: "weekly"
       day: "saturday"
     rebase-strategy: "disabled"
+    labels: ["autoupdate"]
+    groups:
+      github-actions:
+        patterns: ["*"]
+
+  # Note: only "==" pins are bumped; ">=" floors and dev pre-releases are not
+  - package-ecosystem: "pip"
+    directory: "/environments"
+    schedule:
+      interval: "weekly"
+      day: "saturday"
+    rebase-strategy: "disabled"
+    labels: ["autoupdate"]
+    groups:
+      pip:
+        patterns: ["*"]
+
+  # Handles plain conda-forge "pkg=X.Y.Z" pins and pip: sections
+  - package-ecosystem: "conda"
+    directory: "/environments"
+    schedule:
+      interval: "weekly"
+      day: "saturday"
+    rebase-strategy: "disabled"
+    labels: ["autoupdate"]
+    groups:
+      conda:
+        patterns: ["*"]
+
+  - package-ecosystem: "pre-commit"
+    directory: "/"
+    schedule:
+      interval: "weekly"
+      day: "saturday"
+    rebase-strategy: "disabled"
+    labels: ["autoupdate"]
+    groups:
+      pre-commit:
+        patterns: ["*"]
diff --git a/.github/workflows/pre-commit-autoupdate.yml b/.github/workflows/pre-commit-autoupdate.yml
deleted file mode 100644
index b84c3fc2f61..00000000000
--- a/.github/workflows/pre-commit-autoupdate.yml
+++ /dev/null
@@ -1,50 +0,0 @@
-name: Autoupdate pre-commit
-
-on:
-  # To be able to be triggered manually
-  workflow_dispatch:
-  # To guarantee Maintained check is occasionally updated. See
-  # https://github.com/ossf/scorecard/blob/main/docs/checks.md#maintained
-  schedule:
-    - cron: '28 2 * * 6' # Saturday at 02:28 UTC
-
-permissions: read-all
-
-jobs:
-  autoupdate:
-    name: Autoupdate
-
-    runs-on: ubuntu-latest
-    timeout-minutes: 10
-
-    permissions:
-      # Needed to create a PR with autoupdate changes
-      contents: write
-      pull-requests: write
-
-    steps:
-      - name: Checkout DPNP repo
-        uses: actions/checkout@9c091bb21b7c1c1d1991bb908d89e4e9dddfe3e0 # v7.0.0
-
-      - name: Set up python
-        uses: actions/setup-python@ece7cb06caefa5fff74198d8649806c4678c61a1 # v6.3.0
-        with:
-          python-version: '3.14'
-
-      - name: Install pre-commit
-        run: pip install pre-commit
-
-      - name: Run pre-commit autoupdate
-        run: pre-commit autoupdate
-
-      - name: Create a PR with autoupdate changes
-        uses: peter-evans/create-pull-request@5f6978faf089d4d20b00c7766989d076bb2fc7f1 #v8.1.1
-        with:
-          commit-message: 'chore: update pre-commit hooks'
-          add-paths: .pre-commit-config.yaml
-          branch: 'bot/pre-commit-autoupdate'
-          delete-branch: true
-          title: Weekly pre-commit autoupdate
-          body: |
-            This PR updates the `.pre-commit-config.yaml` using `pre-commit autoupdate`.
-          labels: autoupdate